Why does FastCopy create exact copies of files that have different folder counts?

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I use FastCopy everyday to backup all the files on my D drive to an E drive of the same capacity. But when I select and compare the files, everything matches up except for the folder count. What is that about?

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Note: The files selected for comparison are all personal, none are hidden or system files.

Answer

FastCopy has an option that leaves out empty folders

By default, this option is checked. So if the copy job has filters checked as well, empty folders will not be copied over. To solve this, simply uncheck the option and apply.

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More info can be found under Settings > Copy/Move options on
FastCopy’s official page